neuroml.morph
Class Morphology

java.lang.Object
  neuroml.morph.Morphology

public class Morphology
extends java.lang.Object

The main element which details the neuronal morphology. Cells, various histological features, and properties associated with the data can be contained in this element

Java class for Morphology complex type.

The following schema fragment specifies the expected content contained within this class.

 <complexType name="Morphology">
   <complexContent>
     <restriction base="{http://www.w3.org/2001/XMLSchema}anyType">
       <sequence>
         <group ref="{http://morphml.org/metadata/schema}metadata"/>
         <element name="cells" type="{http://morphml.org/morphml/schema}Cells"/>
         <element name="features" minOccurs="0">
           <complexType>
             <complexContent>
               <restriction base="{http://www.w3.org/2001/XMLSchema}anyType">
                 <sequence>
                   <group ref="{http://morphml.org/metadata/schema}metadata"/>
                   <element name="feature" type="{http://morphml.org/morphml/schema}Feature" maxOccurs="unbounded"/>
                 </sequence>
               </restriction>
             </complexContent>
           </complexType>
         </element>
         <element name="propertyDetails" minOccurs="0">
           <complexType>
             <complexContent>
               <restriction base="{http://www.w3.org/2001/XMLSchema}anyType">
                 <sequence>
                   <element name="propertyDetail" type="{http://morphml.org/metadata/schema}PropertyDetail" maxOccurs="unbounded"/>
                 </sequence>
               </restriction>
             </complexContent>
           </complexType>
         </element>
         <element name="groupDetails" minOccurs="0">
           <complexType>
             <complexContent>
               <restriction base="{http://www.w3.org/2001/XMLSchema}anyType">
                 <sequence>
                   <element name="groupDetail" type="{http://morphml.org/metadata/schema}GroupDetail" maxOccurs="unbounded"/>
                 </sequence>
               </restriction>
             </complexContent>
           </complexType>
         </element>
       </sequence>
       <attribute name="lengthUnits" use="required" type="{http://morphml.org/metadata/schema}LengthUnits" />
       <attribute name="name" type="{http://www.w3.org/2001/XMLSchema}string" />
       <attribute name="volumeUnits" type="{http://morphml.org/metadata/schema}VolumeUnits" default="cubic_millimetre" />
     </restriction>
   </complexContent>
 </complexType>
 

Nested Class Summary

static class	Morphology.Features Java class for anonymous complex type.
static class	Morphology.GroupDetails Java class for anonymous complex type.
static class	Morphology.PropertyDetails Java class for anonymous complex type.

Field Summary

protected Annotation	annotation
protected Cells	cells
protected Morphology.Features	features
protected java.util.List<java.lang.String>	group
protected Morphology.GroupDetails	groupDetails
protected LengthUnits	lengthUnits
protected java.lang.String	name
protected java.lang.String	notes
protected Properties	properties
protected Morphology.PropertyDetails	propertyDetails
protected VolumeUnits	volumeUnits

Constructor Summary

Morphology()

Method Summary

Annotation	getAnnotation() Gets the value of the annotation property.
java.util.List<Cell>	getCellList() Gets the list of cells for this Morphology.
Cells	getCells() Gets the value of the cells property.
Morphology.Features	getFeatures() Gets the value of the features property.
java.util.List<java.lang.String>	getGroup() Gets the value of the group property.
Morphology.GroupDetails	getGroupDetails() Gets the value of the groupDetails property.
LengthUnits	getLengthUnits() Gets the value of the lengthUnits property.
java.lang.String	getName() Gets the value of the name property.
java.lang.String	getNotes() Gets the value of the notes property.
Properties	getProperties() Gets the value of the properties property.
Morphology.PropertyDetails	getPropertyDetails() Gets the value of the propertyDetails property.
VolumeUnits	getVolumeUnits() Gets the value of the volumeUnits property.
void	setAnnotation(Annotation value) Sets the value of the annotation property.
void	setCells(Cells value) Sets the value of the cells property.
void	setFeatures(Morphology.Features value) Sets the value of the features property.
void	setGroupDetails(Morphology.GroupDetails value) Sets the value of the groupDetails property.
void	setLengthUnits(LengthUnits value) Sets the value of the lengthUnits property.
void	setName(java.lang.String value) Sets the value of the name property.
void	setNotes(java.lang.String value) Sets the value of the notes property.
void	setProperties(Properties value) Sets the value of the properties property.
void	setPropertyDetails(Morphology.PropertyDetails value) Sets the value of the propertyDetails property.
void	setVolumeUnits(VolumeUnits value) Sets the value of the volumeUnits property.

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Detail

notes

protected java.lang.String notes

properties

protected Properties properties

annotation

protected Annotation annotation

group

protected java.util.List<java.lang.String> group

cells

protected Cells cells

features

protected Morphology.Features features

propertyDetails

protected Morphology.PropertyDetails propertyDetails

groupDetails

protected Morphology.GroupDetails groupDetails

lengthUnits

protected LengthUnits lengthUnits

name

protected java.lang.String name

volumeUnits

protected VolumeUnits volumeUnits

Constructor Detail

Morphology

public Morphology()

Method Detail

getNotes

public java.lang.String getNotes()

Gets the value of the notes property.

Returns:

possible object is String

setNotes

public void setNotes(java.lang.String value)

Sets the value of the notes property.

Parameters:

value - allowed object is String

getProperties

public Properties getProperties()

Gets the value of the properties property.

Returns:

possible object is Properties

setProperties

public void setProperties(Properties value)

Sets the value of the properties property.

Parameters:

value - allowed object is Properties

getAnnotation

public Annotation getAnnotation()

Gets the value of the annotation property.

Returns:

possible object is Annotation

setAnnotation

public void setAnnotation(Annotation value)

Sets the value of the annotation property.

Parameters:

value - allowed object is Annotation

getGroup

public java.util.List<java.lang.String> getGroup()

Gets the value of the group property.

This accessor method returns a reference to the live list, not a snapshot. Therefore any modification you make to the returned list will be present inside the JAXB object. This is why there is not a set method for the group property.

For example, to add a new item, do as follows:

    getGroup().add(newItem);
 

Objects of the following type(s) are allowed in the list String

getCells

public Cells getCells()

Gets the value of the cells property.

Returns:

possible object is Cells

setCells

public void setCells(Cells value)

Sets the value of the cells property.

Parameters:

value - allowed object is Cells

getFeatures

public Morphology.Features getFeatures()

Gets the value of the features property.

Returns:

possible object is Morphology.Features

setFeatures

public void setFeatures(Morphology.Features value)

Sets the value of the features property.

Parameters:

value - allowed object is Morphology.Features

getPropertyDetails

public Morphology.PropertyDetails getPropertyDetails()

Gets the value of the propertyDetails property.

Returns:

possible object is Morphology.PropertyDetails

setPropertyDetails

public void setPropertyDetails(Morphology.PropertyDetails value)

Sets the value of the propertyDetails property.

Parameters:

value - allowed object is Morphology.PropertyDetails

getGroupDetails

public Morphology.GroupDetails getGroupDetails()

Gets the value of the groupDetails property.

Returns:

possible object is Morphology.GroupDetails

setGroupDetails

public void setGroupDetails(Morphology.GroupDetails value)

Sets the value of the groupDetails property.

Parameters:

value - allowed object is Morphology.GroupDetails

getLengthUnits

public LengthUnits getLengthUnits()

Gets the value of the lengthUnits property.

Returns:

possible object is LengthUnits

setLengthUnits

public void setLengthUnits(LengthUnits value)

Sets the value of the lengthUnits property.

Parameters:

value - allowed object is LengthUnits

getName

public java.lang.String getName()

Gets the value of the name property.

Returns:

possible object is String

setName

public void setName(java.lang.String value)

Sets the value of the name property.

Parameters:

value - allowed object is String

getVolumeUnits

public VolumeUnits getVolumeUnits()

Gets the value of the volumeUnits property.

Returns:

possible object is VolumeUnits

setVolumeUnits

public void setVolumeUnits(VolumeUnits value)

Sets the value of the volumeUnits property.

Parameters:

value - allowed object is VolumeUnits

getCellList

public java.util.List<Cell> getCellList()

Gets the list of cells for this Morphology.