neuroml.morph
Class Cell

java.lang.Object
  neuroml.morph.Cell

Direct Known Subclasses:

Level3Cell

public class Cell
extends java.lang.Object

Definition of a cell.

Java class for Cell complex type.

The following schema fragment specifies the expected content contained within this class.

 <complexType name="Cell">
   <complexContent>
     <restriction base="{http://www.w3.org/2001/XMLSchema}anyType">
       <sequence>
         <group ref="{http://morphml.org/metadata/schema}metadata"/>
         <group ref="{http://morphml.org/metadata/schema}referencedata"/>
         <element name="cellBody" minOccurs="0">
           <complexType>
             <complexContent>
               <restriction base="{http://www.w3.org/2001/XMLSchema}anyType">
                 <sequence>
                   <group ref="{http://morphml.org/metadata/schema}metadata"/>
                   <choice>
                     <element name="polygon" type="{http://morphml.org/metadata/schema}Polygon"/>
                     <element name="polyhedron" type="{http://morphml.org/metadata/schema}Polyhedron"/>
                     <element name="sphere" type="{http://morphml.org/metadata/schema}Sphere"/>
                   </choice>
                 </sequence>
               </restriction>
             </complexContent>
           </complexType>
         </element>
         <element name="segments" maxOccurs="unbounded" minOccurs="0">
           <complexType>
             <complexContent>
               <restriction base="{http://www.w3.org/2001/XMLSchema}anyType">
                 <sequence>
                   <group ref="{http://morphml.org/metadata/schema}metadata"/>
                   <element name="segment" type="{http://morphml.org/morphml/schema}Segment" maxOccurs="unbounded"/>
                 </sequence>
                 <attribute name="name" type="{http://www.w3.org/2001/XMLSchema}string" />
               </restriction>
             </complexContent>
           </complexType>
         </element>
         <element name="freePoints" type="{http://morphml.org/morphml/schema}FreePoints" minOccurs="0"/>
         <element name="spines" minOccurs="0">
           <complexType>
             <complexContent>
               <restriction base="{http://www.w3.org/2001/XMLSchema}anyType">
                 <sequence>
                   <group ref="{http://morphml.org/metadata/schema}metadata"/>
                   <element name="spine" type="{http://morphml.org/morphml/schema}Spine" maxOccurs="unbounded"/>
                 </sequence>
               </restriction>
             </complexContent>
           </complexType>
         </element>
         <element name="cables" minOccurs="0">
           <complexType>
             <complexContent>
               <restriction base="{http://www.w3.org/2001/XMLSchema}anyType">
                 <sequence>
                   <group ref="{http://morphml.org/metadata/schema}metadata"/>
                   <element name="cable" type="{http://morphml.org/morphml/schema}Cable" maxOccurs="unbounded"/>
                   <element name="cablegroup" type="{http://morphml.org/morphml/schema}CableGroup" maxOccurs="unbounded" minOccurs="0"/>
                 </sequence>
               </restriction>
             </complexContent>
           </complexType>
         </element>
       </sequence>
       <attribute name="name" type="{http://www.w3.org/2001/XMLSchema}string" />
     </restriction>
   </complexContent>
 </complexType>
 

Nested Class Summary

static class	Cell.Cables Java class for anonymous complex type.
static class	Cell.CellBody Java class for anonymous complex type.
static class	Cell.Segments Java class for anonymous complex type.
static class	Cell.Spines Java class for anonymous complex type.

Field Summary

protected Annotation	annotation
protected Authors	authorList
protected Cell.Cables	cables
protected Cell.CellBody	cellBody
protected FreePoints	freePoints
protected java.util.List<java.lang.String>	group
protected java.lang.String	name
protected NeuronDBReference	neuronDBref
protected java.lang.String	notes
protected Properties	properties
protected java.util.List<Publication>	publication
protected java.util.List<Cell.Segments>	segments
protected Cell.Spines	spines

Constructor Summary

Cell()

Method Summary

Annotation	getAnnotation() Gets the value of the annotation property.
Authors	getAuthorList() Gets the value of the authorList property.
java.util.List<Cable>	getCableList() Get the list of cables for this Cell.
Cell.Cables	getCables() Gets the value of the cables property.
Cell.CellBody	getCellBody() Gets the value of the cellBody property.
FreePoints	getFreePoints() Gets the value of the freePoints property.
java.util.List<java.lang.String>	getGroup() Gets the value of the group property.
java.lang.String	getName() Gets the value of the name property.
NeuronDBReference	getNeuronDBref() Gets the value of the neuronDBref property.
java.lang.String	getNotes() Gets the value of the notes property.
Properties	getProperties() Gets the value of the properties property.
java.util.List<Publication>	getPublication() Gets the value of the publication property.
java.util.List<Segment>	getSegmentList() Get the list of segments representing this cell.
java.util.List<Segment>	getSegmentList(int indx) Get the segment list at the specified index.
java.util.List<Cell.Segments>	getSegments() Gets the value of the segments property.
Cell.Spines	getSpines() Gets the value of the spines property.
void	setAnnotation(Annotation value) Sets the value of the annotation property.
void	setAuthorList(Authors value) Sets the value of the authorList property.
void	setCables(Cell.Cables value) Sets the value of the cables property.
void	setCellBody(Cell.CellBody value) Sets the value of the cellBody property.
void	setFreePoints(FreePoints value) Sets the value of the freePoints property.
void	setName(java.lang.String value) Sets the value of the name property.
void	setNeuronDBref(NeuronDBReference value) Sets the value of the neuronDBref property.
void	setNotes(java.lang.String value) Sets the value of the notes property.
void	setProperties(Properties value) Sets the value of the properties property.
void	setSpines(Cell.Spines value) Sets the value of the spines property.

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Detail

notes

protected java.lang.String notes

properties

protected Properties properties

annotation

protected Annotation annotation

group

protected java.util.List<java.lang.String> group

authorList

protected Authors authorList

publication

protected java.util.List<Publication> publication

neuronDBref

protected NeuronDBReference neuronDBref

cellBody

protected Cell.CellBody cellBody

segments

protected java.util.List<Cell.Segments> segments

freePoints

protected FreePoints freePoints

spines

protected Cell.Spines spines

cables

protected Cell.Cables cables

name

protected java.lang.String name

Constructor Detail

Cell

public Cell()

Method Detail

getNotes

public java.lang.String getNotes()

Gets the value of the notes property.

Returns:

possible object is String

setNotes

public void setNotes(java.lang.String value)

Sets the value of the notes property.

Parameters:

value - allowed object is String

getProperties

public Properties getProperties()

Gets the value of the properties property.

Returns:

possible object is Properties

setProperties

public void setProperties(Properties value)

Sets the value of the properties property.

Parameters:

value - allowed object is Properties

getAnnotation

public Annotation getAnnotation()

Gets the value of the annotation property.

Returns:

possible object is Annotation

setAnnotation

public void setAnnotation(Annotation value)

Sets the value of the annotation property.

Parameters:

value - allowed object is Annotation

getGroup

public java.util.List<java.lang.String> getGroup()

Gets the value of the group property.

This accessor method returns a reference to the live list, not a snapshot. Therefore any modification you make to the returned list will be present inside the JAXB object. This is why there is not a set method for the group property.

For example, to add a new item, do as follows:

    getGroup().add(newItem);
 

Objects of the following type(s) are allowed in the list String

getAuthorList

public Authors getAuthorList()

Gets the value of the authorList property.

Returns:

possible object is Authors

setAuthorList

public void setAuthorList(Authors value)

Sets the value of the authorList property.

Parameters:

value - allowed object is Authors

getPublication

public java.util.List<Publication> getPublication()

Gets the value of the publication property.

This accessor method returns a reference to the live list, not a snapshot. Therefore any modification you make to the returned list will be present inside the JAXB object. This is why there is not a set method for the publication property.

For example, to add a new item, do as follows:

    getPublication().add(newItem);
 

Objects of the following type(s) are allowed in the list Publication

getNeuronDBref

public NeuronDBReference getNeuronDBref()

Gets the value of the neuronDBref property.

Returns:

possible object is NeuronDBReference

setNeuronDBref

public void setNeuronDBref(NeuronDBReference value)

Sets the value of the neuronDBref property.

Parameters:

value - allowed object is NeuronDBReference

getCellBody

public Cell.CellBody getCellBody()

Gets the value of the cellBody property.

Returns:

possible object is Cell.CellBody

setCellBody

public void setCellBody(Cell.CellBody value)

Sets the value of the cellBody property.

Parameters:

value - allowed object is Cell.CellBody

getSegments

public java.util.List<Cell.Segments> getSegments()

Gets the value of the segments property.

This accessor method returns a reference to the live list, not a snapshot. Therefore any modification you make to the returned list will be present inside the JAXB object. This is why there is not a set method for the segments property.

For example, to add a new item, do as follows:

    getSegments().add(newItem);
 

Objects of the following type(s) are allowed in the list Cell.Segments

getFreePoints

public FreePoints getFreePoints()

Gets the value of the freePoints property.

Returns:

possible object is FreePoints

setFreePoints

public void setFreePoints(FreePoints value)

Sets the value of the freePoints property.

Parameters:

value - allowed object is FreePoints

getSpines

public Cell.Spines getSpines()

Gets the value of the spines property.

Returns:

possible object is Cell.Spines

setSpines

public void setSpines(Cell.Spines value)

Sets the value of the spines property.

Parameters:

value - allowed object is Cell.Spines

getCables

public Cell.Cables getCables()

Gets the value of the cables property.

Returns:

possible object is Cell.Cables

setCables

public void setCables(Cell.Cables value)

Sets the value of the cables property.

Parameters:

value - allowed object is Cell.Cables

getName

public java.lang.String getName()

Gets the value of the name property.

Returns:

possible object is String

setName

public void setName(java.lang.String value)

Sets the value of the name property.

Parameters:

value - allowed object is String

getSegmentList

public java.util.List<Segment> getSegmentList()

Get the list of segments representing this cell.

getSegmentList

public java.util.List<Segment> getSegmentList(int indx)

Get the segment list at the specified index.

getCableList

public java.util.List<Cable> getCableList()

Get the list of cables for this Cell.