neuroml
Class NeuroMLLevel3

java.lang.Object
  neuroml.NeuroMLLevel3

public class NeuroMLLevel3
extends java.lang.Object

Description of neuronal models, including biophysics and channel mechanisms, and network connections (NeuroML Level 3).

Java class for NeuroMLLevel3 complex type.

The following schema fragment specifies the expected content contained within this class.

 <complexType name="NeuroMLLevel3">
   <complexContent>
     <restriction base="{http://www.w3.org/2001/XMLSchema}anyType">
       <sequence>
         <group ref="{http://morphml.org/metadata/schema}metadata"/>
         <group ref="{http://morphml.org/metadata/schema}referencedata"/>
         <element name="cells" minOccurs="0">
           <complexType>
             <complexContent>
               <restriction base="{http://www.w3.org/2001/XMLSchema}anyType">
                 <sequence>
                   <element name="cell" type="{http://morphml.org/neuroml/schema}Level3Cell" maxOccurs="unbounded"/>
                 </sequence>
               </restriction>
             </complexContent>
           </complexType>
         </element>
         <element name="channels" type="{http://morphml.org/channelml/schema}ChannelML" minOccurs="0"/>
         <group ref="{http://morphml.org/networkml/schema}CoreNetworkElements" minOccurs="0"/>
       </sequence>
       <attribute name="lengthUnits" use="required" type="{http://morphml.org/metadata/schema}LengthUnits" />
       <attribute name="name" type="{http://www.w3.org/2001/XMLSchema}string" />
       <attribute name="volumeUnits" type="{http://morphml.org/metadata/schema}VolumeUnits" default="cubic_millimetre" />
     </restriction>
   </complexContent>
 </complexType>
 

Nested Class Summary

static class

NeuroMLLevel3.Cells Java class for anonymous complex type.

Field Summary

protected Annotation	annotation
protected Authors	authorList
protected NeuroMLLevel3.Cells	cells
protected ChannelML	channels
protected java.util.List<java.lang.String>	group
protected LengthUnits	lengthUnits
protected java.lang.String	name
protected NeuronDBReference	neuronDBref
protected java.lang.String	notes
protected Populations	populations
protected Projections	projections
protected Properties	properties
protected java.util.List<Publication>	publication
protected VolumeUnits	volumeUnits

Constructor Summary

NeuroMLLevel3()

Method Summary

Annotation	getAnnotation() Gets the value of the annotation property.
Authors	getAuthorList() Gets the value of the authorList property.
java.util.List<Level3Cell>	getCellList() Get the list of cells in this NeuroML file
NeuroMLLevel3.Cells	getCells() Gets the value of the cells property.
ChannelML	getChannels() Gets the value of the channels property.
java.util.List<java.lang.String>	getGroup() Gets the value of the group property.
LengthUnits	getLengthUnits() Gets the value of the lengthUnits property.
java.lang.String	getName() Gets the value of the name property.
NeuronDBReference	getNeuronDBref() Gets the value of the neuronDBref property.
java.lang.String	getNotes() Gets the value of the notes property.
java.util.List<Population>	getPopulationList() Get the list of populations in this NeuroML file
Populations	getPopulations() Gets the value of the populations property.
java.util.List<Projection>	getProjectionList() Get the list of projections in this NeuroML file
Projections	getProjections() Gets the value of the projections property.
Properties	getProperties() Gets the value of the properties property.
java.util.List<Publication>	getPublication() Gets the value of the publication property.
VolumeUnits	getVolumeUnits() Gets the value of the volumeUnits property.
void	setAnnotation(Annotation value) Sets the value of the annotation property.
void	setAuthorList(Authors value) Sets the value of the authorList property.
void	setCells(NeuroMLLevel3.Cells value) Sets the value of the cells property.
void	setChannels(ChannelML value) Sets the value of the channels property.
void	setLengthUnits(LengthUnits value) Sets the value of the lengthUnits property.
void	setName(java.lang.String value) Sets the value of the name property.
void	setNeuronDBref(NeuronDBReference value) Sets the value of the neuronDBref property.
void	setNotes(java.lang.String value) Sets the value of the notes property.
void	setPopulations(Populations value) Sets the value of the populations property.
void	setProjections(Projections value) Sets the value of the projections property.
void	setProperties(Properties value) Sets the value of the properties property.
void	setVolumeUnits(VolumeUnits value) Sets the value of the volumeUnits property.

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Detail

notes

protected java.lang.String notes

properties

protected Properties properties

annotation

protected Annotation annotation

group

protected java.util.List<java.lang.String> group

authorList

protected Authors authorList

publication

protected java.util.List<Publication> publication

neuronDBref

protected NeuronDBReference neuronDBref

cells

protected NeuroMLLevel3.Cells cells

channels

protected ChannelML channels

populations

protected Populations populations

projections

protected Projections projections

lengthUnits

protected LengthUnits lengthUnits

name

protected java.lang.String name

volumeUnits

protected VolumeUnits volumeUnits

Constructor Detail

NeuroMLLevel3

public NeuroMLLevel3()

Method Detail

getNotes

public java.lang.String getNotes()

Gets the value of the notes property.

Returns:

possible object is String

setNotes

public void setNotes(java.lang.String value)

Sets the value of the notes property.

Parameters:

value - allowed object is String

getProperties

public Properties getProperties()

Gets the value of the properties property.

Returns:

possible object is Properties

setProperties

public void setProperties(Properties value)

Sets the value of the properties property.

Parameters:

value - allowed object is Properties

getAnnotation

public Annotation getAnnotation()

Gets the value of the annotation property.

Returns:

possible object is Annotation

setAnnotation

public void setAnnotation(Annotation value)

Sets the value of the annotation property.

Parameters:

value - allowed object is Annotation

getGroup

public java.util.List<java.lang.String> getGroup()

Gets the value of the group property.

This accessor method returns a reference to the live list, not a snapshot. Therefore any modification you make to the returned list will be present inside the JAXB object. This is why there is not a set method for the group property.

For example, to add a new item, do as follows:

    getGroup().add(newItem);
 

Objects of the following type(s) are allowed in the list String

getAuthorList

public Authors getAuthorList()

Gets the value of the authorList property.

Returns:

possible object is Authors

setAuthorList

public void setAuthorList(Authors value)

Sets the value of the authorList property.

Parameters:

value - allowed object is Authors

getPublication

public java.util.List<Publication> getPublication()

Gets the value of the publication property.

This accessor method returns a reference to the live list, not a snapshot. Therefore any modification you make to the returned list will be present inside the JAXB object. This is why there is not a set method for the publication property.

For example, to add a new item, do as follows:

    getPublication().add(newItem);
 

Objects of the following type(s) are allowed in the list Publication

getNeuronDBref

public NeuronDBReference getNeuronDBref()

Gets the value of the neuronDBref property.

Returns:

possible object is NeuronDBReference

setNeuronDBref

public void setNeuronDBref(NeuronDBReference value)

Sets the value of the neuronDBref property.

Parameters:

value - allowed object is NeuronDBReference

getCells

public NeuroMLLevel3.Cells getCells()

Gets the value of the cells property.

Returns:

possible object is NeuroMLLevel3.Cells

setCells

public void setCells(NeuroMLLevel3.Cells value)

Sets the value of the cells property.

Parameters:

value - allowed object is NeuroMLLevel3.Cells

getChannels

public ChannelML getChannels()

Gets the value of the channels property.

Returns:

possible object is ChannelML

setChannels

public void setChannels(ChannelML value)

Sets the value of the channels property.

Parameters:

value - allowed object is ChannelML

getPopulations

public Populations getPopulations()

Gets the value of the populations property.

Returns:

possible object is Populations

setPopulations

public void setPopulations(Populations value)

Sets the value of the populations property.

Parameters:

value - allowed object is Populations

getProjections

public Projections getProjections()

Gets the value of the projections property.

Returns:

possible object is Projections

setProjections

public void setProjections(Projections value)

Sets the value of the projections property.

Parameters:

value - allowed object is Projections

getLengthUnits

public LengthUnits getLengthUnits()

Gets the value of the lengthUnits property.

Returns:

possible object is LengthUnits

setLengthUnits

public void setLengthUnits(LengthUnits value)

Sets the value of the lengthUnits property.

Parameters:

value - allowed object is LengthUnits

getName

public java.lang.String getName()

Gets the value of the name property.

Returns:

possible object is String

setName

public void setName(java.lang.String value)

Sets the value of the name property.

Parameters:

value - allowed object is String

getVolumeUnits

public VolumeUnits getVolumeUnits()

Gets the value of the volumeUnits property.

Returns:

possible object is VolumeUnits

setVolumeUnits

public void setVolumeUnits(VolumeUnits value)

Sets the value of the volumeUnits property.

Parameters:

value - allowed object is VolumeUnits

getCellList

public java.util.List<Level3Cell> getCellList()

Get the list of cells in this NeuroML file

getPopulationList

public java.util.List<Population> getPopulationList()

Get the list of populations in this NeuroML file

getProjectionList

public java.util.List<Projection> getProjectionList()

Get the list of projections in this NeuroML file